TSTT Presentations

2001

D.L. Brown, The Terascale Simulation Tools and Technologies Center, Advanced Computing for 21st Century Accelerator Science and Technology Center Kickoff Meeting, Stanford CA, August 2001. [ppt]

Corley, R.A., Trease, H.E., Minard, K.R., Rommereim, D.N. and Timchalk, C. (2001). Development of a 3-Dimensional, Computational Fluid Dynamics Model of the Respiratory Tract for Evaluating the Dosimetry of Airborne Particulate Matter. Center for Comparative Respiratory Biology and Medicine Pulmonary Seminar Series, University of California, Davis, CA. May 11, 2001.

J.E. Flaherty, Adaptive and Parallel Discontinuous Galerkin Methods for Hyperbolic Systems, International Conference on Computational Mathematics, Pohang, South Korea, July 2 – July 5, 2001

J.E. Flaherty, Discontinuous Galerkin Methods for Conservation Laws, Minisymposium on Adaptive Grids in Differential Equations, International Conference on Scientific Computation and Differential Equations, Vancouver, July 29 – August 3, 2001.

L. Freitag, The Terascale Simulation Tools and Technologies Center, Invited Lecture, Snowmass Accelerator Meeting, Snowmass CO, July 2001. [ppt]

L. Freitag, Component Technologies for High-Performance Computing, Invited Seminar presentation, The Pennsylvania State University, State College, PA, October 2001.

J. Glimm, August 28, 2001. Quantification of Uncertainty for Numerical Simulations with Confidence Intervals, Workshop on Uncertainty Quantification, Annapolis MD.

J. Glimm, October 11, 2001 Numerical and Theoretical Methods for the Determination of Mix, High Energy Density Science Symposium, Livermore CA.

J. Glimm, December 13, 2001. Theoretical Methods for the Determination of Mix, Workshop on the Theory of Compressible Turbulent Mixing, Pasadena CA.

W.D. Henshaw, An Algorithm for Projecting Points onto a Patched CAD Model, 10th International Meshing Roundtable, Newport Beach, CA, October 2001

W.D. Henshaw, Overture: an object-oriented framework for overlapping grid applications Special Session on Overset Tools for AIAA, AIAA Conference on Applied Aerodynamics, St. Louis, MO, June 2001.

L. Krivodonova, A Posteriori Error Estimation for Discontinuous Galerkin Method, invited poster presentation, American Women in Mathematics Workshop, SIAM National Meeting, San Diego, July 9 – 13, 2001.

L. Krivodonova, Error Estimation for Discontinuous Galerkin Method, Minisymposium on Discontinuous Galerkin Methods, Sixth U.S. National Congress on Computational Mechanics, Dearborn, August 1 – 3, 2001.

Xiaolin Li, Numerical Tracking of the Material Interface: Why and How, Mechanical Engineering Colloquium, Rutgers University, Oct. 10, 2001

Xiaolin Li, Numerical method in determination of turbulent mixing, 8th International Workshop on Physics of Compressible Turbulent Mixing, Pasadena, CA, Dec. 9-14, 2001.

Neiplocha, J., Trease, H.E., Palmer, B. J., Rector, D.R. (2001). Building an Application Domain Specific Programming Framework for Computational Fluid Dynamics Calculations on Parallel Computers. Tenth SIAM Conference on Parallel Processing for Scientific Computing, March 12-14, 2001.

Remacle, J.-F. Three Dimensional Parallel Adaptive Discontinuous Galerkin Method for Solving Conservation Laws, Minisymposium on Discontinuous Galerkin Methods, Sixth U.S. National Congress on Computational Mechanics, Dearborn, August 1 – 3, 2001.

Remacle, J.-F., A parallel algorithm oriented mesh database, 10th International Meshing Roundtable, Newport Beach, CA, Oct. 8, 2001.

Remacle, J.-F. Adaptive Parallel Software for Mesh Management, Minisymposium on Dynamic Load Balancing for Adaptive Computations, Sixth U.S. National Congress on Computational Mechanics, Dearborn, August 1 – 3, 2001.

Shephard, M.S., Efficient Domain Discretizations for Adaptive Methods, SIAM Annual Meeting, July 13, 2001.

Shephard, M.S. A Flexible Structure for Controlling Adaptively Defined Meshes, U.S. National Congress on Computational Mechanics, August 1, 2001.

Shephard, M.S. Mesh Enrichment Using Local Mesh Modification, U.S. National Congress on Computational Mechanics, August 1, 2001.

Shephard, M.S., Terascale Simulation Tools and Technologies: Technical Plans, TOPS Center Kick-Off meeting, Argonne National Laboratories, Argonne, IL, August 20, 2001.[ppt]

Shephard, M.S., Automation of Large-Scale Simulations with Emphasis on a Flexible DG Procedure, National Energy Research Scientific Computing (NERSC) Center, Lawrence Berkeley National Laboratory, Berkeley, CA, September 25, 2001.

Shephard, M.S., On anisotropic mesh generation and quality control in complex flow problems, 10th International Meshing Roundtable, Newport Beach, CA, Oct. 9, 2001.

Shephard, M.S., Geometry issues in mesh generation and high-order finite element methods, Fall Workshop on Computational Geometry 2001, Polytechnic University, Brooklyn, NY, Nov. 2, 2001.

Timchalk, C., Corley, R.A., Trease, H.E., Minard, K.R., Elder, S.H. and Dixon, D.A. (2001). Development of a 3-dimensional virtual respiratory tract (VRT) model for studying the health implications of airborne pollutants. Symposium From Genes to Organs: Advances in Biological Modeling, 40th Annual meeting of the Society of Toxicology. March 25-29, 2001.

Trease, H.E., Miller, J.H., Dixon, D.A. (2001). Reconstructing 3-D Cell Geometry From Cellular Microscopy Images By Using NWGrid. Presented at the First International Symposium on Computational Cell Biology. Cranwell Resort, Lenox, MA. March 4-6, 2001.

Trease, H.E., Corley, R.A., Timchalk, C., Minard, K., Rommereim, D.N., Dixon, D.A, Kimbell, J.S. and Asgharian, B. (2001). Simulating the Mammalian Respiratory Tract Using NWGrid and NWPhys. International Conference on Mathematical and Theoretical Biology and the Annual Meeting of the Society for Mathematical Biology Joint with the Japanese Association for Mathematical Biology. Hilo, HI. July 16-19, 2001.

Trease, H.E., Miller, J.H, Dixon, D.A. and Schaff, J. Modeling the Computational Cell by Using the NWGrid and NWPhys Simulation Frameworks. International Conference on Mathematical and Theoretical Biology and the Annual Meeting of the Society for Mathematical Biology Joint with the Japanese Association for Mathematical Biology. Hilo, HI. July 16-19, 2001.

Trease, H.E., Fowler, J., Trease, L.L. Unstructured, Hybrid Grid Generation Applied to Computational Physiology and Computational Biology. 3rd Symposium on Trends in Unstructured Mesh Generation, 6th U. S. National Congress on Computational Mechanics. Dearborn, MI. August 1-4, 2001. (Lynn Trease presented)

Trease, H.E., Hybrid Grid Generation Using NWGrid/NWPhys, International Grid Generation Conference, July 2001, Detroit, MI. (Presented by Lynn Trease)

Trease, H.E., Simulation of Mammailian Lungs Using NWGrid/NWPhys, BMES Conference, October, 2001, Duram, NC.

Trease, H.E., Computational Cell Biology Using NWGrid/NWPhys, BMES Conference, October, 2001, Duram, NC.

Trease, H.E., Hybrid Grid Generation for Computational Biology Applications, Stoney-Brook University, December, 2001, Stoney-Brook University, NY.

2002

D. L. Brown, Creating Interoperable Meshing and Discretization Technology, the Terascale Simulation Tools and Technologies Center, 8th International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, HI, June 2002. UCRL-PRES-151494 [pdf]

D.L. Brown, The Terascale Simulation Tools and Technologies Center, A Workshop on the ACTS Collection, Berkeley, CA, September 2002. UCRL-PRES-151475 [pdf]

D. L. Brown, Overture Software for Solving PDEs in Complex Geometry, A Workshop on the ACTS Collection, Berkeley, CA, September 2002. UCRL-PRES-150012 [pdf]

K. Chand, Component Based Hybrid Mesh Generation, Stanford Linear Accelerator Center, Stanford, CA, July 2002. UCRL-PRES-150594 [pdf]

K. Chand, Overture Tools for Geometry Management and Mesh Generation, Lawrence Livermore National Laboratory, June 2002. UCRL-PRES-150595 [pdf]

K. Chand, Component Based Hybrid Mesh Generation, Lawrence Livermore National Laboratory, 2002.

P. Fast, Overview of NASA’s Field Encapsulation Library and implications to design of TSTT Operators, presentation to TSTT team at LLNL, July 2, 2002 .

J.E. Flaherty, Adaptive and Parallel Discontinuous Galerkin Methods for Hyperbolic Systems, Research Institute in Advanced Computer Science (RIACS), NASA Ames Research Center, Moffett Field, January 9, 2002.

J.E. Flaherty, Adaptive and Parallel Discontinuous Galerkin Methods for Hyperbolic Systems, Institute of Mathematical Sciences, Chinese University of Hong Kong, Hong Kong, March 6, 2002.

J.E. Flaherty, Adaptive and Parallel Discontinuous Galerkin Methods for Hyperbolic Systems, Department of Mathematics, State University of New York, Stony Brook, April 17, 2002.

J.E. Flaherty, Adaptive and Parallel Discontinuous Galerkin Methods for Hyperbolic Systems, Workshop on Discontinuous Galerkin Methods, Mathematisches Forschungsinstitut Oberwolfach, Oberwolfach, April 22-26, 2002.

J.E. Flaherty, Discontinuous Galerkin Methods for Hyperbolic Systems, Numerical Analysis Seminar, Courant Institute of Mathematical Sciences, New York University, New York, May 3, 2002.

J.E. Flaherty, Tools for the Adaptive Solution of Problems arising in CFD and MHD, Minisymposium on Computational Science and Engineering: Tools and Applications, SIAM 50th Anniversary and 2002 Annual Meeting, Philadelphia, July 8-12, 2002.

J.E. Flaherty, Error Estimation for Discontinuous Galerkin Solutions of Hyperbolic Systems, Minisymposium on Discontinuous Galerkin Methods for Partial Differential Equations, SIAM 50th Anniversary and 2002 Annual Meeting, Philadelphia, July 8-12, 2002.

J.E. Flaherty, Adaptive Software with Biological and Chemical Applications. Symposium in Honor of ICASE’s 30th Anniversary, Newport News July 25-26, 2002.

P. Fischer, Spectral Element Methods for Transitional Flows, Invited presentation at the NCAR Geophysical Turbulence Program workshop on Adaptive and High-Order Methods with Applications in Turbulence, 4-6 February 2002.

L. Freitag, Using Components for Adaptive Algorithms in High Performance Computing Environments, Invited Keynote, Workshop on Adaptive Algorithms, Mississippi State University, Starksville, MS, January 2002.

L. Freitag and P. Knupp, The TSTT Center and MESQUITE Mesh Quality Improvement Toolkit, Invited Seminar, Los Alamos National Laboratory, Los Alamos, NM, May 2002.

L. Freitag, Interoperable Meshing and Discretization Technologies, Invited Seminar, Sandia Naitonal Laboratories, Albuquerque, NM, May 2002.

L. Freitag, TSTT Interface Definition Efforts, Invited Panel Participant on Meshing and Geometry Standards, International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, HI, June 2002.

L. Freitag, Complex Applications using CCA Technologies, CCA quarterly tutorial presentations, Santa Fe, January 2002 and Argonne National Laboratory, June 2002.

L. Freitag, The Terascale Simulation Tools and Technologies Center, SIAM Annual Meeting, Philadelphia, PA, July 2002.

L. Freitag, Interface Definition Efforts in the TSTT Center, 11th International Meshing Roundtable, Ithaca, NY, September 2002.

J. Glimm, January 7, 2002. Prediction of Oil Production with Confidence Intervals Workshop on Quantifying Uncertainty and Multiscale Phenomena in Subsurface Processes, Institute for Mathematical Analysis, U. Minn., Minneapolis.

J. Glimm, January 15, 2002. Terascale Simulation Tools and Technologies Center PIs’ Kickoff Meeting for Scientific Discovery with Advanced Computing. Reston, VA.

J. Glimm, February 24, 2002. Mixing in Late Time Supernovae, 4th International Conference on High Energy Density Laboratory Astrophysics, University of Michigan, Ann Arbor, MI.

J. Glimm, March 18, 2002. Recent Developments in (a) Shock Physics Simulations and (b) Prediction with Quantification of Uncertainty. Sandia National Laboratory. Albuquerque, NM.

J. Glimm, March 29, 2002. Predictability and Solution Error Models for Flow in Porous Media. Invited Plenary speaker, Southeast Conference on Partial Differential Equations and Mathematical Physics. U. Alabama, Birmingham AL.

J. Glimm, April 3, 2002. Numerical and Theoretical Methods for the Determination of Mix. Colloquium, Dept. Mechanical Eng. TAMU, College Station TX.

J. Glimm, April 10, 2002. Chaos, complex fluid dynamics and stochastic modeling Address for VIGRE fellows, U Stony Brook, Stony Brook NY.

J. Glimm, April 11, 2002. Fluids, Numerical Simulation and Applied Mathematics Stony Brook Mathematics Club. University at Stony Brook, Stony Brook NY.

J. Glimm, May 13, 2002. Numerical and Theoretical Methods for the Determination of Mix Seminar at Courant Institute of Mathematical Sciences, NYU NY NY.

J. Glimm, May 23, 2002. Engineering 2010: The Plan and the Planning Process, Stony Brook University Chairs’ retreat. University at Stony Brook, NY.

J. Glimm, June 5, 2002. Numerical and Theoretical Methods for the Determination of Mix Plenary talk at the IMPA — 50 Years Conference. IMPA, Rio De Janeiro, Brazil.

J. Glimm, July 9, 2002. Prediction of Oil Production with Confidence Intervals. Minisymposium talk at SIMA National Meeting, Philadelphia, PA.

J. Glimm, August 5, 2002. Prediction of Oil Production with Confidence Intervals Invited Plenary Speaker, International Conference on Multiscale Phenomena, Petropolis, Brazil.

W.D. Henshaw, Generating Composite Overlapping Grids on CAD Geometries, Terascale Simulation Tools and Technologies Mini-Symposium at the 8th International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, HI June 2002

P. Knupp, MESQUITE Design, 8th Intl. Conference on Numerical Grid Generation in Computational Field Simulations, 6 June 2002.

P. Knupp, MESQUITE Design, T-Division Colloquium, Los Alamos National Laboratory, 15 May 2002.

P. Knupp, MESQUITE Design and Implementation, Carnegie Mellon Workshop at the 11th International Meshing Roundtable, 18 Sept. 2002.

Xiaolin Li, Simplification, Conservation and Adaptivity in the Front Tracking Method, Invited Presentation, 9th International Conference on Hyperbolic Problems, Theory, Numerics and Applications, Pasadena, CA, March 25-29, 2002.

Xiaolin Li, Unstructured grids in 3D and 4D for a time-dependent interface in front tracking with improved accuracy, 8th International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, Hawaii, June 2-6, 2002.

Xiaolin Li, Front Tracking Method and Fluid Interface Instabilities, CUSPEA Conference on Physics in Twenty First Century, Beijing, June 5-7, 2002.

Xiaolin Li, Simulation of Fuel-injection Jet Using the Front Tracking Method, Colloquium, Department of Mechanics, Beijing University, China, June 7, 2002.

Xiaolin Li, Computational Methods for Partial Differential Equations and Applications, Nanjing Normal University, China, June 13, 2002.

Xiaolin Li, From Ghost-cell to Conservative Front Tracking, Minisymposium Presentation at the SIAM 50th Anniversary Meeting, Philadelphia, PA, July 11, 2002.

Xiaolin Li, Ghost-cell to Conservative Front Tracking,ICM (International Congress of Mathematicians) Satellite Conference on Scientific Computing, Xi’an, China, August 13-18, 2002.

W. Oh. A Parallelized, Structured-Unstructured Hybrid, Tetrahedral Grid Construction, invited presentation to the Department of Mathematics, Pohang University of Science and Technology, Pohang, Korea. August 12, 2002.

Remacle, J.F., Trellis: A framework for adaptive numerical analysis based on multiparadigm programming in C++, WCCM V: Fifth World Congress on Computational Mechanics, Vienna Univ. of Tech, Vienna, Austria, July 8, 2002.

Remacle, J.-F., Higher-order adaptive and parallel discontinuous Galerkin methods for hyperbolic systems, WCCM V: Fifth World Congress on Computational Mechanics, Vienna Univ. of Tech, Vienna, Austria, July 8, 2002.

Remacle, J.F., Parallel Mesh Refinements with Optimal Load Balancing, WCCM V: Fifth World Congress on Computational Mechanics, Vienna Univ. of Tech, Vienna, Austria, July 10, 2002.

Remacle J.F., Parallel Algorithm Oriented Mesh Datastructure, Adaptive and High-Order Methods with Applications in Turbulence, University of Colorado, Boulder, February 11-13, 2002.

Saripalli, P. and Trease, H.E., Development of Cellular Absorptive and Tracers for the Characterization of Nanoscale Biological Systems, The Nanoscale Science and Technology Workshop, Sept. 19-20, 2002, University of Washington.

Shephard, M.S., Some issues on distributed mesh representations, 8th International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, Hawai, June 2, 2002.

Shephard, M.S., The Influence of Geometric Approximation on the Accuracy of High Order Methods, 8th International Conference on Numerical Grid Generation in Computational Field Simulations, Honolulu, Hawai, June 2, 2002.

Shephard, M.S.,Meshing for p-version finite element methods, WCCM V: Fifth World Congress on Computational Mechanics, Vienna Univ. of Tech, Vienna, Austria, July 8, 2002.

Shephard, M.S., Mesh Modification for general adaptive mesh control, WCCM V: Fifth World Congress on Computational Mechanics, Vienna Univ. of Tech, Vienna, Austria, July 9, 2002.

Trease, H., Trease, L., Fowler, J., Corley, R., Timchalk, C., Minard, K., and Rommeriem, D., A Case Study: Extraction, Image Reconstruction, And Mesh Generation From NMR Volume Image Data From F344 Rats For Computational Biology Applications, Presented at the 8th International Conference on Grid Generation and Computational Physics, 2002.

Trease, H.E., Corley, R.A., Timchalk, C., Minard, K. and Dixon, D.A. (2000). Development of a 3-Dimensional Virtual Lung Model, International Symposium on Susceptibility Factors for Respiratory Diseases, Presented at the Lovelace Respiratory Research Institute. Santa Fe, NM. October 3-6, 2000.

Trease, H.E., Tools and Technology for Unstructured Meshes using NWGrid/NWPhys, CS&E seminar, Feburary 2002.

Trease, H.E., Unstructured Mesh Methods Applied to Computational Biology Applications, LLNL, Feburary 2002, Livermore, CA,

Trease, H.E. and Trease, L.L,Building a Computational Biology Simulation Framework Using the DOE SciDAC Terascale Simulation Tools and Technology (TSTT) Capabilities, SIAM Philadelphia Meeting, 07/2002.

Trease, H.E, Grid Generation Tools for Performing Feature Extraction, Image Reconstruction, and Mesh Generation on Digital Image Data for Computational Biology Applications, 8th International Conference on Numerical Grid Generation in Computational Field Simulations, 06/2002.

Trease, H.E., Trease, L.L., Fowler, J.D., NWGrid/NWPhys Workshop and hands-on tutorials, April 2002.

2003

Glimm, J. Front Tracking, Short Course Lecture, SIAM Conference on Computational Science and Engineering 2003, San Diego, CA, February, 2003.ppt